Category Archives: MMETSP

ASLO Aquatic Sciences meeting – Honolulu, HI

Posted on March 10, 2017 by Lisa Johnson

Aloha! Last week I gave a talk on re-assembling de novo transcriptomes for the MMETSP at the Association for the Sciences of Limnology & Oceanography (ASLO) Aquatic Sciences meeting in Honolulu, HI held at the Hawaii Convention Center from February 27 to March … Continue reading →

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MMETSP re-assemblies

Posted on September 13, 2016 by Lisa Johnson

*** Update (9/27/2016): 719 assemblies now available at the links below. All FINISHED!!! *** Update (9/22/2016): 715 assemblies now available at the links below. I have *almost* finished re-assembling de novo transcriptomes from the Marine Microbial Eukaryotic Transcriptome Sequencing Project (Keeling … Continue reading →

Posted in Bioinformatics, cluster, Data Analyses, MMETSP, reproducibility, science | Leave a comment

Marine Microbes! What to do with all the data?

Posted on April 7, 2016 by Lisa Johnson

UPDATE: Check out Titus’ blog post, Bashing on monstrous sequencing collections. Since Sept 2015, I’ve been a PhD student in C. Titus Brown’s lab at UC Davis working with data from Moore’s Marine Microbial Eukaryotic Transcriptome Sequencing Project (MMETSP). I would … Continue reading →

Posted in Grad School, MMETSP, science | 3 Comments