Category Archives: Links

Python is cool.

Some Python links: http://pycogent.org/ http://nbviewer.ipython.org/ http://nbviewer.ipython.org/github/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers/blob/master/Chapter1_Introduction/Chapter1_Introduction.ipynb https://github.com/ipython/ipython/wiki/A-gallery-of-interesting-IPython-Notebooks

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What I’m Reading This Week

A blog that I read (Molecular Ecologist) has a Friday post almost every week about what they’re reading. I enjoy hearing about what other people are reading. It gives me ideas. These are some of the things I’ve been reading … Continue reading

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Raw Microarray Data Distribution Analyses – MA plotting

http://en.wikipedia.org/wiki/MA_plot Click to access EMA_vignette.pdf Click to access arrayBasics.pdf Click to access 576.full.pdf http://bioinformatics.oxfordjournals.org/content/25/3/415.full Click to access MicroArrayAnalysis.pdf http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=3&cad=rja&ved=0CDsQFjAC&url=http%3A%2F%2Fwww.cs.princeton.edu%2Fpicasso%2Fmats%2Fmicroarray_analysis_basics_F08&ei=atFYUuKHOYSE9QSl4oDwDg&usg=AFQjCNGEIzdK6iTxhhB2-8xWCMoYPkbp8A&sig2=M5QRF3J3GtQquc-PnPVsKQ&bvm=bv.53899372,d.eWU Click to access Lecture16.pdf Click to access gibson.MetEnz.pdf Click to access 06.pdf Click to access Analysis-of-Microrrays-with-R-and-Bioconductor.pdf Click to access shannon_clustering.pdf http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=8&cad=rja&ved=0CGQQFjAH&url=http%3A%2F%2Fwww.people.vcu.edu%2F~mreimers%2FHTDA%2FMicroarray%2520Quality%2520Assessment.ppt&ei=-tFYUsjRH4qY9gT7qIDgCg&usg=AFQjCNHPlLvQgZ_BMQg-gWMi_uKY4I76pQ&sig2=GEzbwcGNcbFHvJZMgsx6sw&bvm=bv.53899372,d.eWUContinue reading

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Permutations

Combinations of items, order matters: import itertools http://docs.python.org/3.3/library/itertools.html#itertools.permutations http://en.wikipedia.org/wiki/Permutation

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How To Get Help

Dr. Roger Peng’s intuitive set of instructions for how to properly ask questions on a programming forum is quite entertaining and informative: His video presentation was inspired by this: http://www.catb.org/esr/faqs/smart-questions.html

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