Monthly Archives: April 2015

Error loading bedtools/2.22.0

By default, gcc/4.4 is loaded in my cluster environment. This happened when running bedtools: gcc/4.7.0(5):ERROR:150: Module ‘gcc/4.7.0’ conflicts with the currently loaded module(s) ‘gcc/4.4’ gcc/4.7.0(5):ERROR:102: Tcl command execution failed: conflict gcc/4.4 bedtools/2.22.0(6):ERROR:151: Module ‘bedtools/2.22.0’ depends on one of the module(s) … Continue reading

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R Classes: factor vs. character

How to subset a data frame with only gene names in common with another list? Turned out, problem was the class of one list was a ‘factor’ and the other was a ‘character’. Solution: > qPCR<-read.csv(“file1.csv”) > Affy_DE_list<-read.csv(“file2.csv”) > class(qPCR) … Continue reading

Posted in Bioinformatics, R | Leave a comment