Monthly Archives: February 2015

How many transcripts?

How many transcripts are there in┬ácommon model species reference annotation files? [17:21] cohenl06@phoenix1 ~ $ cut -f9 /local/data/iGenomes/Mus_musculus/UCSC/mm9/Annotation/Genes/genes.gtf | cut -d “;” -f1 | sort | uniq | wc -l 23366 [17:21] cohenl06@phoenix1 ~ $ cut -f9 /local/data/iGenomes/Homo_sapiens/UCSC/hg19/Annotation/Genes/genes.gtf | cut … Continue reading

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