Genomics Workshop (Week 2, Day 4) – QIIME and Metgenomics Analyses


Daniel McDonald from Dr. Rob Knight’s lab, U. Colorado

Some links:
http://www.earthmicrobiome.org/
http://www.hmpdacc.org/

QIIME analysis tool, using iPython notebook:
http://evomics.org/learning/genomics/metagenomics/metagenomics-laboratories/

Data files:
http://qiime.org/home_static/dataFiles.html
from this study:
http://www.ncbi.nlm.nih.gov/pubmed/21624126
additional info:
http://www.ncbi.nlm.nih.gov/pubmed/20534432

argument for using iPython notebook:
http://www.ncbi.nlm.nih.gov/pubmed/23096404

iPython notebook:
http://ipython.org/ipython-doc/stable/interactive/notebook.html

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About Lisa Johnson

PhD candidate at UC Davis.
This entry was posted in Bioinformatics, Data Analyses, Python. Bookmark the permalink.

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