Biobase’s “ExpressionSet” package:
sponge_ExpressionSet<-new("ExpressionSet",exprs=sponge_data,phenoData=pd,experimentData=experimentData,featureData=an) Error in validObject(.Object) : invalid class “ExpressionSet” object: 1: featureNames differ between assayData and featureData invalid class “ExpressionSet” object: 2: sampleNames differ between assayData and phenoData
It is looking for the same data in all sets to match. I need to figure out how it wants featureNames and sampleNames to be specified, row headers? a column of data?