Raw Microarray Data Distribution Analyses – MA plotting

http://en.wikipedia.org/wiki/MA_plot

http://cran.r-project.org/web/packages/EMA/vignettes/EMA_vignette.pdf
http://faculty.ucr.edu/~tgirke/HTML_Presentations/Manuals/Microarray/arrayBasics.pdf
http://bioinformatics.oxfordjournals.org/content/18/4/576.full.pdf
http://bioinformatics.oxfordjournals.org/content/25/3/415.full
http://www3.it.nuigalway.ie/agolden/bioconductor/version1/MicroArrayAnalysis.pdf
http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=3&cad=rja&ved=0CDsQFjAC&url=http%3A%2F%2Fwww.cs.princeton.edu%2Fpicasso%2Fmats%2Fmicroarray_analysis_basics_F08&ei=atFYUuKHOYSE9QSl4oDwDg&usg=AFQjCNGEIzdK6iTxhhB2-8xWCMoYPkbp8A&sig2=M5QRF3J3GtQquc-PnPVsKQ&bvm=bv.53899372,d.eWU
http://www.bioinformatics.wsu.edu/bioinfo_course/notes/Lecture16.pdf
http://www.biology.gatech.edu/people/pdf/gibson.MetEnz.pdf
http://www.horizonpress.com/cimb/v/v4/06.pdf
http://cri.uchicago.edu/wp-content/uploads/2012/05/Analysis-of-Microrrays-with-R-and-Bioconductor.pdf
http://www.bioss.ac.uk/~dirk/lectures/gti_jan04/papers/shannon_clustering.pdf
http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=8&cad=rja&ved=0CGQQFjAH&url=http%3A%2F%2Fwww.people.vcu.edu%2F~mreimers%2FHTDA%2FMicroarray%2520Quality%2520Assessment.ppt&ei=-tFYUsjRH4qY9gT7qIDgCg&usg=AFQjCNHPlLvQgZ_BMQg-gWMi_uKY4I76pQ&sig2=GEzbwcGNcbFHvJZMgsx6sw&bvm=bv.53899372,d.eWU
http://www.pmean.com/99/arrayImport.htm

Bioconductor:
http://www.bioconductor.org/packages/2.12/bioc/vignettes/limma/inst/doc/usersguide.pdf
http://www.sbforum.org/cmsimages/presentations/BioC.pdf
http://www.bioconductor.org/help/course-materials/2008/BioC2008/labs/arrayQA/

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About Lisa Johnson

PhD candidate at UC Davis.
This entry was posted in Data Analyses, Links, Microarray. Bookmark the permalink.

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