test vcf_reader

once you get a virtualenv set up and pyvcf installed, you can work with vcf files:

import vcf

with open(‘F0–R0.vcf’) as vcf_reader:
for record in vcf_reader:
print(record)

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About Lisa Johnson

PhD candidate at UC Davis.
This entry was posted in Bioinformatics, Python, virtualenv. Bookmark the permalink.

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