Links and References

Links and references to get started.

stackoverflow

python

learningpythonthehardway

http://teamtreehouse.com/
https://www.ai-class.com/
http://www.udacity.com/

Bioinformatics python links:
http://jura.wi.mit.edu/bio/education/
http://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2004/study-materials/
http://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2004/syllabus/
http://www.dalkescientific.com/writings/NBN/

http://biopython.org/wiki/Biopython
http://biopython.org/DIST/docs/tutorial/Tutorial.html
http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc6
http://bonsai.hgc.jp/~mdehoon/software/python/
http://www.pasteur.fr/formation/infobio/infobio-en.html
http://homepages.feis.herts.ac.uk/~comqdp1/BioInf/
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2098836/

http://www.biopython.org/w/index.php?title=Gene_Ontology&redirect=no
http://rpy.sourceforge.net/
http://bcbio.wordpress.com/

http://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2004/

Tophat
http://tophat.cbcb.umd.edu/

Bowtie
http://bowtie-bio.sourceforge.net/index.shtml

Galaxy
http://galaxyproject.org/

http://bcbio.wordpress.com/
https://github.com/chapmanb/bcbb
https://github.com/magus/bioinformatics
http://blastedbio.blogspot.com/2012/10/how-not-to-deal-with-ngs-data-mrfast.html
http://pythonicprose.blogspot.com/2009/09/python-split-paragraph-into-sentences.html
http://bacpathgenomics.wordpress.com/getting-started/
http://followthedata.wordpress.com/

learning:
http://cs.brown.edu/courses/csci1810/

http://telliott99.blogspot.com/

http://www.awaretek.com/tutorials.html

http://learnpythonthehardway.org/book/intro.html

https://www.udacity.com/course/cs101

https://www.coursera.org/course/interactivepython

http://www.pythontutor.com/visualize.html#

http://biopython.org/wiki/Scriptcentral
https://github.com/biopython/biopython
http://www.sbg.bio.ic.ac.uk/~mueller/

http://www.pymol.org/

http://starship.python.net/crew/gherman/potpurri/align/

http://fhcrc.github.com/seqmagick/

https://github.com/likit/BioUtils

http://wiki.g2.bx.psu.edu/

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About Lisa Johnson

PhD candidate at UC Davis.
This entry was posted in Bioinformatics, Links, Python. Bookmark the permalink.

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